– 2014 –

Pyka M, Klatt S, Cheng S (2014) Parametric Anatomical Modeling: A method for modeling the anatomical layout of neurons and their projections, Frontiers in Neuroanatomy.

Krug A, Cabanis M, Pyka M, Pauly K, Walter H, Landsberg M, Shah NJ, Winterer G, Wölwer W, Musso F, Müller BW, Wiedemann G, Herrlich J, Schnell K, Vogeley K, Schilbach L, Langohr K, Rapp A, Klingberg S, Kircher T (2014) Investigation of decision-making under uncertainty in healthy subjects: a multi-centric fMRI study, Behav Brain Res, 15;261:89-96. doi: 10.1016/j.bbr.2013.12.013.

Pyka M and Cheng S (2014) Pattern association and consolidation emerges from connectivity properties between cortex and hippocampus, PLoS ONE.

– 2013 –

Krug A, Cabanis M, Pyka M, Pauly K, Kellermann T, …, Kircher T (2013) Attenuated prefrontal activation during decision-making under uncertainty in schizophrenia: A multi-centre fMRI study, Schizophrenia Research, in press.

Backasch B, Straube B, Pyka M, Klöhn-Saghatolislam F, Müller B, Kircher T, Leube D (2013) Hyperintentionality during automatic perception of naturalistic cooperative behavior in patients with schizophrenia, Social Neuroscience, in press

Heider D, Bartenhagen C, Dybowski JN, Hauke S, Pyka M, Hoffmann D (2013) Unsupervised dimension reduction methods for protein sequence classification, Data Analysis, Machine Learning and Knowledge Discovery, in press.

Hahn T, Dresler T, Pyka M, Notebaert K, Fallgatter J (2013) Local synchronization of resting-state dynamics encodes Gray’s trait Anxiety, Plos One.

Reif A, Richter J, Straube B, Höfler M, Lueken U, Gloster A T, Weber H, Domschke K, Fehm L, Ströhle A, Jansen A, Gerlach A, Pyka M, Reinhardt I, Konrad C, …, Deckert J (2013) MAOA and mechanisms of panic disorder revisited: from bench to molecular psychotherapy, Molecular Psychiatry, doi:10.1038/mp.2012.172

Cabanis M, Pyka M, Mehl S, Müller BW, Loos-Jankowiak S, Winterer G, …, Kircher T (2013) The precuneus and the insula in self-attributional processes, Cognitive, Affective and Behavioral Neuroscience.

– 2012 –

Paulus FM, Bedenbender J, Krach S, Pyka M, Krug A, Sommer J, Mette M, Nöthen MM, Witt S, Rietschel M, Kircher T, Jansen A (2012) Association of rs1006737 in CACNA1C with alterations in prefrontal activation and fronto-hippocampal connectivity, Human Brain Mapping.

Pyka M, Kircher T, Hauke S, Heider D (2012) The Brain in a box: an encoding scheme for natural neural networks, In Proceedings of the 4th International Joint Conference on Computational Intelligence, pages196-201, DOI: 10.5220/0004152801960201. PDF

Kircher T, Arolt V, Jansen A, Pyka M, Reinhardt I, Kellermann T,  Konrad C, Lueken U, Gloster AT, Gerlach AL, Ströhle A, Wittmann A, Pfleiderer B, Wittchen HU, Straube B (2012) Effect of Cognitive-Behavioral Therapy on Neural Correlates of Fear Conditioning in Panic Disorder, Biological Psychiatry, http://dx.doi.org/10.1016/j.biopsych.2012.07.026.

Burgmer M, Kugel H, Pfleiderer B, Ewert A, Lenzen T, Pioch R, Pyka M, Sommer J, Arolt V, Heuft G, Konrad C (2012) The Mirror Neuron System under Hypnosis – Brain Substrates of Voluntary and Involuntary Motor Activation in Hypnotic Paralysis, Cortex.

Pyka M, Hahn T, Heider D, Krug A, Sommer J, Kircher T, Jansen A. Baseline Activity Predicts Working Memory Load Of Preceding Task Condition. Human Brain Mapping 2012.

Pyka M, Balz A, Jansen A, Krug A, Hüllermeier E. A WEKA interface for fMRI data. Neuroinformatics 2012 (in press)

Hahn T, Dresler T, Ehlis AC, Pyka M, Dieler AC, Saathoff C, Jakob PM, Lesch KP, Fallgatter AJ (2012) Randomness of resting-state brain oscillations encodes Gray’s personality trait. NeuroImage, 59:1842-1845.

– 2011 –

Bedenbender J, Paulus FM, Krach S, Pyka M, Sommer J, Krug A, Witt SH, Rietschel M, Laneri D, Kircher T, Jansen A. Functional connectivity analyses in imaging genetics: considerations on methods and data interpretation. PLoS One 2011, 6(12):e26354

Driver J, Heider D, Hauke S, Borschbach M, Pyka M. Hierarchical Text Clustering Based on Independent Component Analysis. Proceedings of the Computational Linguistic Application Conference 2011, 17-21. Paper Award

Dybowski JN, Riemenschneider M, Hauke S, Pyka M, Verheyen J, Hoffmann D, Heider D: Improved Bevirimat resistance prediction by combination of structural and sequence-based classifiers. BioData Mining 2011, 4:26

Paulus FM, Krach S, Bedenbender J, Pyka M, Sommer J, Krug A, Knake S, Nöthen MM, Witt SH, Rietschel M, Kircher T, Jansen A (2011) Partial support for ZNF804A risk status dependent alterations in prefrontal connectivity. Human Brain Mapping doi: 10.1002/hbm.2143.

Pyka M, Burgmer M, Lenzen T, Pioch R, Dannlowski U, Pfleiderer B, Ewert AW, Heuft G, Arolt V, Konrad C (2011) Brain correlates of hypnotic paralysis – a resting-state fMRI study. NeuroImage 56:2173-82.

Hauke S, Pyka M, Heider D (2011) Group-Agreement as a Reliability Measure for Witness Recommendations in Reputation-Based Trust Protocols, Transactions on Computational Science XII, Lecture Notes in Computer Science, 6670:231-255.

– 2010 –

Pyka M, Heider D, Hauke S, Kircher T, Jansen A (2010) Dynamic Causal Modeling with Genetic Algorithms, Journal of Neuroscience Methods 194(2): 402-406.

Suslow T, Konrad C, Kugel H, Rumstadt D, Zwitserlood P, Schöning S, Ohrmann P, Bauer J, Pyka M, Kersting A, Arolt V, Heindel W, Dannlowski U (2010) Automatic mood-congruent amygdala responses to masked facial expressions in major depression. Biological psychiatry 67:155-60.

Hauke S, Pyka M, Heider D (2010) Towards Improved Trust Diffusion Through Active Recommender Propagation, Systemics and Informatics World Network, 10:121-129.

Sehlmeyer C, Dannlowski U, Schöning S, Kugel H, Pyka M, Pfleiderer B, Zwitserlood P, Schiffbauer H, Heindel W, Arolt V, Konrad C (2010) Neural correlates of trait anxiety in fear extinction. Psychological medicine:1-10.

Hauke S, Pyka M, Borschbach M, Heider D (2010) Augmenting Reputation-based Trust Metrics with Rumor-like Dissemination of Reputation Information, IFIP Advances in Information and Communication Technology, 330:136-147.

Heider D, Hauke S, Pyka M, Kessler D (2010) Insights into the classification of small GTPases. Advances and Applications in Bioinformatics and Chemistry 3.

Schöning S, Engelien A, Bauer C, Kugel H, Kersting A, Roestel C, Zwitserlood P, Pyka M, Dannlowski U, Lehmann W, Heindel W, Arolt V, Konrad C (2010) Neuroimaging Differences in Spatial Cognition between Men and Male-to-Female Transsexuals Before and During Hormone Therapy. The journal of sexual medicine.

Winkler J, Hauke S, Pyka M, Heider D (2010) JACVANN: A Java Framework For Complex Valued Artificial Neural Networks, Systemics and Informatics World Network 2010, 10:48-55

– 2009 –

Pyka M, Hertog M, Fernandez R, Hauke S, Heider D, Dannlowski U, Konrad C (2009) fMRI Data Visualization with BrainBlend and Blender. Neuroinformatics 8(1):21-31.

Pyka M, Beckmann CF, Schöning S, Hauke S, Heider D, Kugel H, Arolt V, Konrad C (2009) Impact of working memory load on FMRI resting state pattern in subsequent resting phases. PloS one 4:e7198.

Heider D, Pyka M, Barnekow A (2009) DNA watermarks in non-coding regulatory sequences. BMC research notes 2:125.

Hauke S, Pyka M, Heider D, Borschbach M (2009) A reputation-based trust framework leveraging the dynamics of complex socio-economic networks for information dissemination In Communications of SIWN, p. 53-58.

Dannlowski U, Konrad C, Kugel H, Zwitserlood P, Domschke K, Schöning S, Ohrmann P, Bauer J, Pyka M, Hohoff C, Zhang W, Baune BT, Heindel W, Arolt V, Suslow T (2009) Emotion specific modulation of automatic amygdala responses by 5-HTTLPR genotype. NeuroImage.

Borschbach M, Hauke S, Pyka M, Heider D (2009) Opportunities and limitations of a principal component analysis optimized machine learning approach for the identification and classification of cancer involved proteins In Communications of SIWN , p. 85-89.

– 2008 –

Borschbach M, Hauke S, Pyka M, Heider D (2008) A preprocessing scheme to reduce the computational complexity of prediction, identification and classification of cancer involved proteins based on machine learning In 17th International Conference on Computing Mexico City.

– 2007 –

Borschbach M, Pyka M (2007) Influence of context matrix construction principles on the ability of linguistic feature extraction by ICA In 15th International Conference on Digital Signal Processing.

– Books –

Pyka M (2008) Methoden der linguistischen Merkmalserkennungmit ICA: Grundlagen, Anwendungen, Evaluation. Verlag Dr. Müller, ISBN: 3836478242.

Pyka M (2004) DirectX 9 in Delphi. Books on Demand GmbH. ISBN: 3833408359